PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G40700.1
Common NameLOC107303722
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 173aa    MW: 19704.3 Da    PI: 9.7865
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G40700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.69.5e-08244754
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  +rEr+RR+++ ++++ L  ++ ++      K +K +i++ A  YI++L
  OB03G40700.1  2 MRERQRREKLSQSYADLYAMVSSR-----SKGDKNSIVQSAAIYIHEL 44
                  79*********************8.....6999999*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.096144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-5150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-11265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-5245No hitNo description
Gene3DG3DSA:4.10.280.101.2E-8263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-5244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MMRERQRREK LSQSYADLYA MVSSRSKGDK NSIVQSAAIY IHELKGARDQ LQRRNEELKA  60
KIMGHDEQQQ CVKVQFEVDE PSSSIDSMIG ALRRLKSMNV KTRKIRSSLS GRSSLSGNRL  120
WTEMNVETTI AACEVEKAVE EALKEVERKQ PDSDAPFPGS RGWTQTSHVQ NVF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0717341e-138AK071734.1 Oryza sativa Japonica Group cDNA clone:J023108N23, full insert sequence.
GenBankHQ8588711e-138HQ858871.1 Oryza sativa Japonica Group isolate UT1684 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689712.11e-127PREDICTED: transcription factor BHLH148
SwissprotQ75KV91e-110BH148_ORYSJ; Transcription factor BHLH148
TrEMBLJ3LSP41e-127J3LSP4_ORYBR; Uncharacterized protein
STRINGOB03G40700.11e-126(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.13e-17bHLH family protein